M.F. Pascutti: search on Z-Library

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1

Alternative Swap Contracts

Baz, Jamil, Pascutti, Michael J

Journal:

The Journal of Derivatives

Year:

1996

Language:

english

File:

PDF, 993 KB

english, 1996

2

Classical and quantum conformational analysis using Generalized Genetic Algorithm

M.A. Moret, P.G. Pascutti, P.M. Bisch, M.S.P. Mundim, K.C. Mundim

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2006

Language:

english

File:

PDF, 213 KB

english, 2006

3

Structural analysis of the N-terminal fragment of the antiangiogenic protein endostatin: A molecular dynamics study

Pedro Henrique Monteiro Torres, Gabriel Limaverde Soares Costa Sousa, Pedro Geraldo Pascutti

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 5.09 MB

english, 2011

4

Dissecting a novel allosteric mechanism of cruzain: A computer-aided approach

Hernández Alvarez, Lilian, Barreto Gomes, Diego Enry, Hernández González, Jorge Enrique, Pascutti, Pedro Geraldo, Salsbury, Freddie

Journal:

Year:

2019

Language:

english

File:

PDF, 8.28 MB

english, 2019

5

New Stochastic Strategy to Analyze Helix Folding

Moret, M.A., Bisch, P.M., Mundim, K.C., Pascutti, P.G.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 407 KB

english, 2002

6

Stochastic molecular optimization using generalized simulated annealing

Moret, M. A., Pascutti, P. G., Bisch, P. M., Mundim, K. C.

Journal:

Journal of Computational Chemistry

Year:

1998

Language:

english

File:

PDF, 583 KB

english, 1998

7

New Developments on Generalized Simulated Annealing Applied to ab-initio Protein Structure Prediction

Melo, Marcelo C., Fernandes, Tácio V., Bernardi, Rafael C., Pascutti, Pedro G.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 91 KB

english, 2012

8

Deletion of A44L, A46R and C12L Vaccinia Virus Genes from the MVA Genome Improved the Vector Immunogenicity by Modifying the Innate Immune Response Generating Enhanced and Optimized Specific T-Cell Responses

Holgado, María, Falivene, Juliana, Maeto, Cynthia, Amigo, Micaela, Pascutti, María, Vecchione, María, Bruttomesso, Andrea, Calamante, Gabriela, del Médico-Zajac, María, Gherardi, María

Journal:

Year:

2016

Language:

english

File:

PDF, 3.66 MB

english, 2016

9

Physicochemical and structural properties of lunasin revealed by spectroscopic, chromatographic and molecular dynamics approaches

Alves de Souza, Stephanny Miranda, Fernandes, TÃ¡cio VinÃcio Amorim, Kalume, DÃ¡rio Eluan, T R Lima, LuÃs MaurÃcio, Pascutti, Pedro Geraldo, de Souza, Theo Luiz Ferraz

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2020

File:

PDF, 5.53 MB

2020

10

Multifractality, Levinthal paradox, and energy hypersurface

Moret, M. A., Pascutti, P. G., Mundim, K. C., Bisch, P. M., Nogueira, E.

Journal:

Physical Review E

Year:

2001

Language:

english

File:

PDF, 156 KB

english, 2001

11

Generalized simulated annealing applied to protein folding studies

Flavia P. Agostini, Diogo De O. Soares-Pinto, Marcelo A. Moret, Carla Osthoff, Pedro G. Pascutti

Journal:

Journal of Computational Chemistry

Year:

2006

Language:

english

File:

PDF, 3.11 MB

english, 2006

12

New parameterization approaches of the LIE method to improve free energy calculations of PlmII-Inhibitors complexes

Pedro A. Valiente, Alejandro Gil L., Paulo R. Batista, Ernesto R. Caffarena, Tirso Pons, Pedro G Pascutti

Journal:

Journal of Computational Chemistry

Year:

2010

Language:

english

File:

PDF, 341 KB

english, 2010

13

Stochastic strategy to analyze protein folding

M.A. Moret, P.M. Bisch, E. Nogueira Jr., P.G. Pascutti

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2005

Language:

english

File:

PDF, 285 KB

english, 2005

14

The role of helices 5 and 6 on the human β1-adrenoceptor activation mechanism

Hoelz, Lucas V.B., Ribeiro, André A.S.T., Bernardi, Rafael C., Horta, Bruno A.C., Albuquerque, Magaly G., da Silva, Joaquim F.M., Pascutti, Pedro G., de Alencastro, Ricardo B.

Journal:

Molecular Simulation

Year:

2012

Language:

english

File:

PDF, 324 KB

english, 2012

15

Brittle reactivation of mylonitic fabric and the origin of the Cenozoic Rio Santana Graben, southeastern Brazil

Ambrosina Gontijo-Pascutti, Francisco H.R. Bezerra, Emanuele La Terra, Julio C.H. Almeida

Journal:

Journal of South American Earth Sciences

Year:

2010

Language:

english

File:

PDF, 4.64 MB

english, 2010

16

Molecular Dynamics Simulations of Signal Sequences at a Membrane/Water Interface

Areas, Elizabeth P. G., Pascutti, Pedro G., Schreier, Shirley, Mundim, Kleber C., Bisch, Paulo M.

Journal:

Journal of Physical Chemistry

Year:

1995

Language:

english

File:

PDF, 1.85 MB

english, 1995

17

1037 Implications of Oligomeric Endostatin for Cancer Therapy

G. Limaverde-Sousa, A.C. Giordani-Duarte, B.K. Robbs, L.B.L. Ballotin, L.P. Cinelli, E. Kurtenbach, J.P.B. Viola, P.G. Pascutti, C.G. Ferreira, T. Coelho-Sampaio

Journal:

European Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

18

Structural analysis of Pla protein from the biological warfare agent Yersinia pestis : docking and molecular dynamics of interactions with the mammalian plasminogen system

Ruback, Eduardo, Lobo, Leandro Araujo, França, Tanos Celmar Costa, Pascutti, Pedro Geraldo

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 757 KB

english, 2013

19

Pro-Apoptotic Protein Noxa Regulates Memory T Cell Population Size and Protects against Lethal Immunopathology

Wensveen, F. M., Klarenbeek, P. L., van Gisbergen, K. P. J. M., Pascutti, M. F., Derks, I. A. M., van Schaik, B. D. C., ten Brinke, A., de Vries, N., Cekinovic, D., Jonjic, S., van Lier, R. A. W., Eld

Journal:

The Journal of Immunology

Year:

2013

Language:

english

File:

PDF, 1.80 MB

english, 2013

20

Non-competitive Inhibitor of Nucleoside Hydrolase from Leishmania donovani Identified by Fragment-based Drug Discovery

Alves, Marina Amaral, Nirma, Charlotte, Moreira, Mayara M., Soares, Rosemberg O., Pascutti, Pedro G., Noel, F, Costa, Paulo, Sant’Anna, Carlos, Barreiro, Eliezer J., Lima, Lídia Moreira, Tinoco, Luzin

Journal:

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

21

Peripheral and systemic antigens elicit an expandable pool of resident memory CD8 + T cells in the bone marrow

Pascutti, Maria F., Geerman, Sulima, Collins, Nicholas, Brasser, Giso, Nota, Benjamin, Stark, Regina, Behr, Felix, Oja, Anna, Slot, Edith, Panagioti, Eleni, Prier, Julia E., Hickson, Sarah, Wolkers, M

Journal:

European Journal of Immunology

Year:

2019

Language:

english

File:

PDF, 1.96 MB

english, 2019

22

Conformational selection, dynamic restriction and the hydrophobic effect coupled to stabilization of the BIR3 domain of the human X-linked inhibitor of apoptosis protein by the tetrapeptide AVPI

Theo Luiz Ferraz de Souza, Daniel Sanches, Rafael Braga Gonçalves, Samuel Silva da RochaPita, Pedro Geraldo Pascutti, M. Lucia Bianconi, Fabio Ceneviva Lacerda de Almeida, Jerson L. Silva, Andréa Cheb

Journal:

Biophysical Chemistry

Year:

2010

Language:

english

File:

PDF, 1.41 MB

english, 2010

23

Molecular dynamics simulations applied to the study of subtypes of HIV-1 protease common to Brazil, Africa, and Asia

Paulo R. Batista, Alan Wilter, Elza H. A. B. Durham, Pedro G. Pascutti

Journal:

Cell Biochemistry and Biophysics

Year:

2006

Language:

english

File:

PDF, 685 KB

english, 2006

24

The Role of Nonbonded Interactions in the Conformational Dynamics of Organophosphorous Hydrolase Adsorbed onto Functionalized Mesoporous Silica Surfaces

Gomes, Diego E. B., Lins, Roberto D., Pascutti, Pedro G., Lei, Chenghong, Soares, Thereza A.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 554 KB

english, 2010

25

Structural and Functional Analysis of a Platelet-Activating Lysophosphatidylcholine of Trypanosoma cruzi

Gazos-Lopes, Felipe, Oliveira, Mauricio M., Hoelz, Lucas V. B., Vieira, Danielle P., Marques, Alexandre F., Nakayasu, Ernesto S., Gomes, Marta T., Salloum, Nasim G., Pascutti, Pedro G., Souto-Padrón,

Journal:

PLoS Neglected Tropical Diseases

Year:

2014

Language:

english

File:

PDF, 5.13 MB

english, 2014

26

Prediction of Non-Competitive Inhibitor Binding Mode Reveals Promising Site for Allosteric Modulation of Falcipain-2

Hernandez Gonzalez, Jorge Enrique, Hernandez Alvarez, Lilian, Pascutti, Pedro Geraldo, Leite, Vitor B.P.

Journal:

Journal of Physical Chemistry B

Year:

2019

Language:

english

File:

PDF, 1.77 MB

english, 2019

27

Improved outcome of Trypanosoma cruzi infection in rats following treatment in early life with suspensions of heat-killed environmental Actinomycetales

G.H. Fontanella, M.F. Pascutti, L. Daurelio, A.R. Perez, A.L. Nocito, D. Wojdyla, O. Bottasso, S.S. Revelli, J.L. Stanford

Journal:

Year:

2007

Language:

english

File:

PDF, 664 KB

english, 2007

28

Density functional and molecular dynamics simulations of local anesthetics in 0.9% NaCl solution

Bernardi, R. C., Gomes, D. E. B., Ito, A. S., Ota, A. T., Pascutti, P. G., Taft, C.

Journal:

Molecular Simulation

Year:

2007

Language:

english

File:

PDF, 446 KB

english, 2007

29

Predicting Binding Modes of Reversible Peptide-Based Inhibitors of Falcipain-2 Consistent with Structure-Activity Relationships

Hernández González, Jorge Enrique, Hernández Alvarez, Lilian, Pascutti, Pedro Geraldo, Valiente, Pedro Alberto

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.40 MB

english, 2017

30

GITR shapes humoral immunity by controlling the balance between follicular T helper cells and regulatory T follicular cells

Oja, Anna E., Brasser, Giso, Slot, Edith, van Lier, RenÃ© A.W., Pascutti, MarÃa F., Nolte, Martijn A.

Journal:

Immunology Letters

Year:

2020

File:

PDF, 2.06 MB

2020

31

Hybrid QM/MM Molecular Dynamics Study of Benzocaine in a Membrane Environment: How Does a Quantum Mechanical Treatment of Both Anesthetic and Lipids Affect Their Interaction

Bernardi, Rafael C., Pascutti, Pedro G.

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 4.16 MB

english, 2012

32

Molecular Dynamics Simulations of the Free and Inhibitor-Bound Cruzain Systems in Aqueous Solvent: Insights on the Inhibition Mechanism in Acidic pH

Hoelz, Lucas Villas Bôas, Leal, Vinícius Fonseca, Rodrigues, Carlos Rangel, Pascutti, Pedro Geraldo, Albuquerque, Magaly Girão, Muri, Estela Maris Freitas, Dias, Luiza Rosaria Sousa

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

33

Predicting functional residues in Plasmodium falciparum plasmepsins by combining sequence and structural analysis with molecular dynamics simulations

Pedro A. Valiente, Paulo R. Batista, Amaury Pupo, Tirso Pons, Alfonso Valencia, Pedro G. Pascutti

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.61 MB

english, 2008

34

Water solvent and local anesthetics: A computational study

R. C. Bernardi, D. E. B. Gomes, P. G. Pascutti, A. S. Ito, C. A. Taft, A. T. Ota

Journal:

International Journal of Quantum Chemistry

Year:

2007

Language:

english

File:

PDF, 210 KB

english, 2007

35

Deficient control of Trypanosoma cruzi infection in C57BL/6 mice is related to a delayed specific IgG response and increased macrophage production of pro-inflammatory cytokines

A.R. Pérez, M. Tamae-Kakazu, M.F. Pascutti, E. Roggero, E. Serra, S. Revelli, O. Bottasso

Journal:

Year:

2005

Language:

english

File:

PDF, 164 KB

english, 2005

36

Conformational Changes in Human Hsp70 Induced by High Hydrostatic Pressure Produce Oligomers with ATPase Activity but without Chaperone Activity

Araujo, Thaı́s L. S., Borges, Julio Cesar, Ramos, Carlos H., Meyer-Fernandes, José Roberto, Oliveira Júnior, Reinaldo S., Pascutti, Pedro G., Foguel, Debora, Palhano, Fernando L.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.41 MB

english, 2014

37

Dataset showing the impact of the protonation states on molecular dynamics of HIV protease

Soares, Rosemberg O., Torres, Pedro H.M., da Silva, Manuela L., Pascutti, Pedro G.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.51 MB

english, 2016

38

Study of defecation disorders in elderly patients

CorrÃªa Neto, Isaac JosÃ© Felippe, Mosca Neto, Mario, Lanfranchi, Vanessa Santos, Pedroso, Thales Ranieri, Figueiredo, Henrique Carvalho e Silva, Mocerino, JÃ©ssica, Pascutti, Marcia, Robles, Laercio

Journal:

Journal of Coloproctology (Rio de Janeiro)

Year:

2020

File:

PDF, 671 KB

2020

39

Computational Perspectives into Plasmepsins Structure—Function Relationship: Implications to Inhibitors Design

Gil L., Alejandro, Valiente, Pedro A., Pascutti, Pedro G., Pons, Tirso

Journal:

Journal of Tropical Medicine

Year:

2011

Language:

english

File:

PDF, 2.08 MB

english, 2011

40

Molecular dynamics of the interaction of Plasmodium falciparum and human serine hydroxymethyltransferase with 5-formyl-6-hydrofolic acid analogues: design of new potential antimalarials

França, Tanos C. C., Wilter, Alan, Ramalho, Teodorico C., Pascutti, Pedro G., Figueroa-Villar, José D.

Journal:

Journal of the Brazilian Chemical Society

Year:

2006

File:

PDF, 910 KB

2006

41

Self-affine analysis of protein energy

P.H. Figueirêdo, M.A. Moret, P.G. Pascutti, E. Nogueira Jr., S. Coutinho

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2010

Language:

english

File:

PDF, 297 KB

english, 2010

42

Studies of molecular docking between fibroblast growth factor and heparin using generalized simulated annealing

Samuel Silva da Rocha Pita, Tácio Vinício Amorim Fernandes, Ernesto Raul Caffarena, Pedro Geraldo Pascutti

Journal:

International Journal of Quantum Chemistry

Year:

2008

Language:

english

File:

PDF, 267 KB

english, 2008

43

Insights into cytochrome bc1 complex binding mode of antimalarial 2-hydroxy-1,4-naphthoquinones through molecular modelling

Sodero, Ana Carolina Rennó, Abrahim-Vieira, Bárbara, Torres, Pedro Henrique Monteiro, Pascutti, Pedro Geraldo, Garcia, Célia RS, Ferreira, Vitor Francisco, Rocha, David Rodrigues da, Ferreira, Sabrina

Journal:

Memórias do Instituto Oswaldo Cruz

Year:

2017

Language:

english

File:

PDF, 4.63 MB

english, 2017

44

QM/MM Molecular Dynamics Methods Applied to Investigate Cellulose Fibers Hydration

Bernardi, Rafael C., Melo, Marcelo C.R., Pascutti, Pedro G.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

45

Self-similarity and protein compactness

Moret, M. A., Santana, M. C., Zebende, G. F., Pascutti, P. G.

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 121 KB

english, 2009

46

Improving the MVA Vaccine Potential by Deleting the Viral Gene Coding for the IL-18 Binding Protein

Falivene, Juliana, Del Médico Zajac, María Paula, Pascutti, María Fernanda, Rodríguez, Ana María, Maeto, Cynthia, Perdiguero, Beatriz, Gómez, Carmen E., Esteban, Mariano, Calamante, Gabriela, Gherardi

Journal:

Year:

2012

Language:

english

File:

PDF, 856 KB

english, 2012

47

Network assesses earthquake potential in Italy's southern Alps

Battaglia, Maurizio, Zuliani, David, Pascutti, Davide, Michelini, Alberto, Marson, Iginio, Murray, Mark H., Bürgmann, Roland

Journal:

Eos Transactions American Geophysical Union

Year:

2003

Language:

english

File:

PDF, 3.82 MB

english, 2003

48

Consensus modes, a robust description of protein collective motions from multiple-minima normal mode analysis—application to the HIV-1 protease

Batista, Paulo Ricardo, Robert, Charles Herbert, Maréchal, Jean-Didier, Hamida-Rebaï, Meriam Ben, Pascutti, Pedro Geraldo, Bisch, Paulo Mascarello, Perahia, David

Journal:

Physical Chemistry Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.96 MB

english, 2010

49

The Conformational Flexibility of an Internal Fusion Peptide from Sars-Cov Spike Glycoprotein is Modulated by Lipid Membrane Composition

Basso, Luis G.M., Fernandes, Tácio V.A., Lima, José F., Crusca, Edson, Vicente, Eduardo F., Cilli, Eduardo M., Pascutti, Pedro G., Costa-Filho, Antonio J.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

50

Insight on Mutation-Induced Resistance from Molecular Dynamics Simulations of the Native and Mutated CSF-1R and KIT

Da Silva Figueiredo Celestino Gomes, Priscila, Chauvot De Beauchêne, Isaure, Panel, Nicolas, Lopez, Sophie, De Sepulveda, Paulo, Geraldo Pascutti, Pedro, Solary, Eric, Tchertanov, Luba, Espinoza-Fonse

Journal:

Year:

2016

Language:

english

File:

PDF, 7.80 MB

english, 2016

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